Publications




This is a complete list of Fabio Rinaldi's publications, listed in reverse chronological order. All publications are peer-reviewed, with the exception of 5, 47, 49 and 53.

Publications since 2000 are available on the Institute's bibliographic server (PAX) and in ZORA (Zurich Open Repository and Archive).
Many of these publications are listed on DBLP.
A couple of recent publications are also available on PubMed Logo.

Some papers are made available on this page to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders.


Classified by venue:
  • Journals: 2, 20, 41, 51, 52, 58
  • Book chapters (excluding conference proceedings): 38, 43
  • Conferences: 3, 4, 6, 7, 8, 10, 11, 12, 13, 14, 16, 17, 18, 21, 25, 26, 27, 31, 32, 34, 42, 45, 46, 48, 53, 59, 60, 64, 65, 66
  • Workshops: 1, 15, 19, 22, 23, 24, 28, 29, 33, 35, 36, 37, 39, 40, 44, 54, 55, 62, 63
  • Posters: 9, 30, 47, 50, 56, 57, 61


Classified by topic:
  • Text Mining: 66, 65, 64, 63, 62, 61, 60, 59, 58, 57, 56, 54, 53, 52, 51, 50, 49, 48, 47, 46, 42, 39, 35
  • Question Answering: 38, 35, 33, 26, 25, 23, 22, 21, 20, 19, 18, 17, 16, 15, 13
  • Terminology, Ontology Learning and Knowledge Management: 43, 41, 40, 32, 29, 23, 18, 17, 14
  • Other: 55, 45, 44, 37, 36, 34, 31, 30, 28, 27, 24, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1


66. Fabio Rinaldi, Dietrich Rebholz-Schuhmann. Support tools for literature-based information access in the genomics domain. 3rd International Universal Communication Symposium. Tokyo, December 2009.

65. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Simon Clematide. Effective Mining of Protein Interactions. LBM 2009: The 3rd International Symposium on Languages in Biology and Medicine. Jeju Island, South Korea, November 8-10, 2009.

64. Kaarel Kaljurand, Fabio Rinaldi, Thomas Kappeler and Gerold Schneider. Using existing biomedical resources to detect and ground terms in biomedical literature. Artificial Intelligence in Medicine, Verona, July 2009.

63. Kaarel Kaljurand, Gerold Schneider and Fabio Rinaldi. A dependency based approach to the BioNLP 2009 Shared Task. BioNLP workshop, NAACL/HLT, Boulder, Colorado 2009.

62. Thomas Kappeler, Kaarel Kaljurand, Fabio Rinaldi. TX Task: Automatic Detection of Focus Organisms in Biomedical Publications. BioNLP workshop, NAACL/HLT, Boulder, Colorado 2009.

61. Kaarel Kaljurand, Thomas Kappeler, Gerold Schneider, Fabio Rinaldi. Detecting and grounding terms in biomedical literature. CICLING 2009.

60. Gerold Schneider, Kaarel Kaljurand, Thomas Kappeler, Fabio Rinaldi. Detecting protein-protein interactions in biomedical texts using a parser and linguistic resources. CICLING 2009.

59. Thomas Kappeler, Simon Clematide, Kaarel Kaljurand, Gerold Schneider, Fabio Rinaldi. Towards Automatic Detection of Experimental Methods from Biomedical Literature. Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008).

58. Fabio Rinaldi, Thomas Kappeler, Kaarel Kaljurand, Gerold Schneider, Manfred Klenner, Simon Clematide, Michael Hess, Jean-Marc von Allmen, Pierre Parisot, Martin Romacker, Therese Vachon. OntoGene in BioCreative II. Genome Biology, 2008, 9:S13. doi:10.1186/gb-2008-9-s2-s13

57. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess. Dependency-Based Relation Mining for Biomedical Literature. LREC 2008, Marrakech, Morocco. May 2008.

56. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand. Tools for detection of Protein Interactions in Biomedical Literature. Genome to Systems, Manchester, UK. 17-19 March 2008.

55. Gerold Schneider, Kaarel Kaljurand, Fabio Rinaldi, Tobias Kuhn. Pro3Gres Parser in the CoNLL Domain Adaptation Shared Task. Proceedings of the ACL Conference, Workshop on Computational Natural Language Learning (CoNLL-XI) Shared Task, Prague, June 2007.

54. Fabio Rinaldi, Thomas Kappeler, Kaarel Kaljurand, Gerold Schneider, Manfred Klenner, Michael Hess, Jean-Marc von Allmen, Martin Romacker, Therese Vachon. OntoGene in Biocreative II. Proceedings of the Second BioCreative Challenge Evaluation Workshop. Madrid, Spain, April 2007 (ISBN 84-933255-6-2).

53. Gerold Schneider, Fabio Rinaldi, Kaarel Kaljurand, Manfred Klenner. From Probabilistic Dependency Parsing to Biomedical Text Mining. Proceedings of The 31st Annual Conference of the German Classification Society on Data Analysis, Machine Learning, and Applications March 7-9, 2007, Freiburg i. Br., Germany.

52. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Martin Romacker. An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinformatics 2006, 7(Suppl 3):S3. doi:10.1186/1471-2105-7-S3-S3

51. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Ourania Konstandi, Andreas Persidis. Mining of Functional Relations between Genes and Proteins over Biomedical Scientific Literature using a Deep-Linguistic Approach. Artificial Intelligence in Medicine (2007) 39, pp. 127-136. doi:10.1016/j.artmed.2006.08.005

50. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess. Tools for Text Mining over Biomedical Literature. Poster presented at ECAI2006.

49. Kaarel Kaljurand, Fabio Rinaldi, Gerold Schneider. Prolog-based query interface to syntactic dependencies extracted from biomedical literature. IFI Technical Report, ifi-2006.04.

48. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Martin Romacker. An Environment for Relation Mining over Richly Annotated Corpora: the case of GENIA. In Proceedings of the Second International Symposium on Semantic Mining in Biomedicine (SMBM 2006). pp. 68-75. Jena, Germany, April 9-12, 2006.

47. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess. A novel approach to Text Mining in the Biomedical Domain. Poster presentation at the Swiss ICT Summit, Freiburg, Switzerland, Oct 31st, 2005.

46. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Andreas Persidis, Ourania Konstanti. Relation Mining over a Corpus of Scientific Literature. In Proceedings of AIME 2005, July 2005, Aberdeen, Scotland. Springer Verlag, LNCS 3581, pp. 535-544. doi:10.1007/11527770_70

45. Norbert E. Fuchs, Stefan Höfler, Kaarel Kaljurand, Fabio Rinaldi, Gerold Schneider. Attempto Controlled English: A Knowledge Representation Language Readable by Humans and Machines. In "Reasoning Web, First International Summer School 2005". Springer Verlag, LNCS 3564.

44. Gerold Schneider, Fabio Rinaldi, Kaarel Kaljurand, Michael Hess, 2005. Closing the Gap: Cognitively Adequate, Fast Broad-Coverage Grammatical Role Parsing. Proceedings of the 2nd International Workshop on Natural Language and Cognitive Science (NLUCS-2005). May 24-25, Miami.

43. Fabio Rinaldi, Elia Yuste, Gerold Schneider, Michael Hess, David Roussel. Exploiting Technical Terminology for Knowledge Management. In Ontology Learning from Text: Methods, Evaluation and Applications, Paul Buitelaar, Philipp Cimiano, Bernardo Magnini (editors). IOS Press, 2005.

42. Gerold Schneider, Fabio Rinaldi, Kaarel Kaljurand, Michael Hess. Steps towards a GENIA Dependency Treebank. In Treebanks and Linguistic Theories (TLT) 2004, Tübingen, December 2004.

41.Eric SanJuan, James Dowdall, Fidelia Ibekwe-SanJuan, Fabio Rinaldi. A symbolic approach to Automatic MultiWord Term Structuring. Computer Speech and Language, Special Issue on Multiword Expressions, 2005, 19(4):524-542.

40. Fabio Rinaldi, Elia Yuste. Exploiting Technical Terminology for Knowledge Management. Workshop on the Application of Language and Semantic Technologies to support Knowledge Management Processes (EKAW 2004), October 2004, Whittlebury Hall, Northamptonshire, UK.

39. Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, James Dowdall, Christos Andronis, Andreas Persidis, Ourania Konstanti. Mining relations in the GENIA corpus. In "Second European Workshop on Data Mining and Text Mining for Bioinformatics", in conjunction with ECML/PKDD 2004, September, 2004, Pisa, Italy.

38. Fabio Rinaldi, Michael Hess, James Dowdall, Diego Mollá, Rolf Schwitter. Question Answering in Terminology-rich Technical Domains. In " New Directions in Question Answering" Maybury, M. T. editor. 2004. AAAI/MIT Press.

37. Gerold Schneider, Fabio Rinaldi, James Dowdall. Fast, Deep-Linguistic Statistical Minimalist Dependency Parsing. COLING-2004 workshop on Recent Advances in Dependency Grammars, August 2004, Geneva, Switzerland.

36. Gerold Schneider, James Dowdall, Fabio Rinaldi. A Robust and Hybrid Deep-Linguistic Theory Applied to Large Scale Parsing COLING-2004 workshop on Robust Methods in Analysis of Natural language Data, August 2004, Geneva, Switzerland.

35. Fabio Rinaldi, James Dowdall, Gerold Schneider, Andreas Persidis. Answering Questions in the Genomics Domain. ACL-2004 workshop on Question Answering in Restricted Domains, July 2004, Barcelona, Spain.

34. Myra Spiliopoulou, Fabio Rinaldi, William J. Black, Gian Piero Zarri, Roland M. Mueller, Marko Brunzel, Babis Theodoulidis, Giorgos Orphanos, Michael Hess, James Dowdall, John McNaught, Maghi King, Andreas Persidis, Luc Bernard. Coupling Information Extraction and Data Mining for Ontology Learning in PARMENIDES. RIAO'2004, Avignon, April 26th-28th, 2004.

33. Rolf Schwitter, Fabio Rinaldi, Simon Clematide. The Importance of How-Questions in Technical Domains. Question-Answering workshop of TALN 04, Fez, Morocco, 22nd April 2004.

32. James Dowdall, Will Lowe, Jeremy Elleman, Fabio Rinaldi, Michael Hess. The role of MultiWord Terminology in Knowledge Management. LREC-2004, Lisbon, 24th-30th May 2004.

31. Kaarel Kaljurand, Fabio Rinaldi, James Dowdall, Michael Hess. Exploiting Language Resources for Semantic Web Annotations. LREC-2004, Lisbon, 24th-30th May 2004.

30. Manfred Klenner, Fabio Rinaldi, Michael Hess. Steps towards Semantically Annotated Language Resources. LREC-2004, Lisbon, 24th-30th May 2004.

29. James Dowdall, Fabio Rinaldi, Andreas Persidis, Kaarel Kaljurand, Gerold Schneider, Michael Hess. Terminology expansion and relation identification between genes and pathways. Workshop on Terminology, Ontology and Knowledge Representation. Universite Jean Moulin (Lyon 3). 22-23 January 2004.

28. Fabio Rinaldi, James Dowdall, Michael Hess, Jeremy Ellman, Gian Piero Zarri, Andreas Persidis, Luc Bernard, Haralampos Karanikas. Multilayer annotations in Parmenides. The K-CAP2003 workshop on "Knowledge Markup and Semantic Annotation", October 25-26, 2003. Sanibel, Florida, USA.

27. Fabio Rinaldi, Kaarel Kaljurand, James Dowdall, Michael Hess. Breaking the Deadlock. ODBASE 2003 (International Conference on Ontologies, Databases and Applications of SEmantics) Catania, Italy. [Springer-Verlag: Lecture Notes in CS]

26. Fabio Rinaldi, Elia Yuste. Extracción automática de respuestas para documentacion técnica. SEPLN 2003 (XIX Congreso de la Sociedad Española para el Procesamiento del Lenguaje Natural), Alcalá de Henares (Madrid), Spain.

25. Fabio Rinaldi, James Dowdall, Michael Hess, Diego Mollá, Rolf Schwitter, Kaarel Kaljurand. Knowledge-Based Question Answering. KES 2003, Knowledge-Based Intelligent Information & Engineering Systems, Oxford.

24. Fabio Rinaldi, James Dowdall, Michael Hess, Kaarel Kaljurand, Andreas Persidis, Babis Theodoulidis, Bill Black, John McNaught, Haralampos Karanikas, Argyris Vasilakopoulos, Kelly Zervanou, Luc Bernard, Gian Piero Zarri, Hilbert Bruins Slot, Chris van der Touw, Margaret Daniel-King, Nancy Underwood, Agnes Lisowska, Lonneke van der Plas, Veronique Sauron, Myra Spiliopoulou, Marko Brunzel, Jeremy Ellman, Giorgos Orphanos, Thomas Mavroudakis, Spiros Taraviras. Parmenides: an opportunity for ISO TC37 SC4? ACL-2003 workshop on Linguistic Annotation, July 2003, Sapporo, Japan.

23. James Dowdall, Fabio Rinaldi, Fidelia Ibekwe SanJuan, Eric SanJuan. Complex structuring of term variants for Question Answering. ACL-2003 workshop "Multiword Expressions: Analysis Acquisition and treatment", 12 July 2003, Sapporo, Japan.

22. Fabio Rinaldi, James Dowdall, Kaarel Kaljurand, Michael Hess and Diego Molla. Exploiting Paraphrases in a Question Answering System. ACL-2003 workshop on paraphrasing (IWP2003), Sapporo.

21. Diego Mollá, Rolf Schwitter, Fabio Rinaldi, James Dowdall, Michael Hess. Anaphora Resolution in ExtrAns. The 2003 International Symposium on Reference Resolution and Its Applications to Question Answering and Summarization. Venice, Italy June 23-25, 2003.

20. Diego Mollá, Fabio Rinaldi, Rolf Schwitter, James Dowdall, Michael Hess. Answer Extraction from Technical Texts. IEEE Intelligent Systems, 18(4), July/August 2003.

19. Diego Mollá, Rolf Schwitter, Fabio Rinaldi, James Dowdall, Michael Hess. NLP for Answer Extraction in Technical Domains. EACL 2003 Workshop: Natural Language Processing for Question Answering, 14 April, Budapest.

18. Fabio Rinaldi, James Dowdall, Michael Hess, Kaarel Kaljurand, Magnus Karlsson. The role of technical Terminology in Question Answering. TIA 2003, Terminologie et Intelligence Artificielle, 31st March - 1st April 2003, Strasbourg.

17. Fabio Rinaldi, James Dowdall, Michael Hess, Kaarel Kaljurand, Mare Koit, Kadri Vider and Neeme Kahusk: Terminology as Knowledge in Answer Extraction. TKE-2002: 6th International Conference on Terminology and Knowledge Engineering, 28th-30th August 2002 Nancy, France. compressed postscript

16. Fabio Rinaldi, James Dowdall, Michael Hess, Diego Molla and Rolf Schwitter: Towards Answer Extraction: An application to Technical Domains. ECAI-2002, Lyon, 21-26 July, 2002. F. van Harmelen (ed.): ECAI 2002. Proceedings of the 15th European Conference on Artificial Intelligence, IOS Press, Amsterdam, 2002. compressed postscript

15. Michael Hess, James Dowdall and Fabio Rinaldi: The Challenge of Technical Text. LREC-2002, Workshop on Question Answering: Strategy and Resources, Las Palmas, 29-31 May 2002. compressed postscript

14. James Dowdall, Michael Hess, Neeme Kahusk, Kaarel Kaljurand, Mare Koit, Fabio Rinaldi and Kadri Vider: Technical Terminology as a Critical Resource. LREC-2002, Las Palmas, 29-31 May 2002. compressed postscript

13. Fabio Rinaldi, Michael Hess, Diego Molla, Rolf Schwitter, James Dowdall, Gerold Schneider, and Rachel Fournier: Answer Extraction in Technical Domains. CICLing-2002, Mexico City, 17-23 February, 2002. Available from Springer Verlag: Computational Linguistics and Intelligent Text Processing. Lecture Notes in Computer Science. VOL. 2276., pg. 360-369.

12. Fabio Ciravegna, Luca Gilardoni, Alberto Lavelli, Silvia Mazza, William Black, Massimo Ferraro, Nadia Mana, Johannes Matiasek, Fabio Rinaldi. Flexible Text Classification for Financial Applications. The FACILE System. PAIS-2000 (subconference of ECAI-2000), Berlin, August 2000. In Werner Horn (editor), ECAI 2000. Proceedings of the 14th European Conference on Artificial Intelligence, IOS Press, Amsterdam, 2000. Compressed Word file

11. J. McNaught, W.J. Black, F. Rinaldi, E. Bertino, A. Brasher, D. Deavin, B. Catania, D. Silvestri, B. Armani, P. Leo, A. Persidis, G. Semeraro, G.P. Zarri, L. Gilardoni Integrated Document and Knowledge Management for the Knowledge-Based Enterprise. PAKeM2000 (The Practical Application of Knowledge Management), April 12-14, 2000, Manchester, UK

10. W.J. Black, F. Rinaldi, J. McNaught Natural Language Processing in Java: Applications in Education and Knowledge Management. PAJava2000 (The Practical Application of Java), April 12-14, 2000, Manchester, UK

9. F. Rinaldi and W.J. Black. A Named Entity Extraction System and its Web Extensions. Proceedings of the VEXTAL Conference, 22-24 November 1999, Venice, Italy, 197-202 pdf

8. F. Ciravegna, A. Lavelli, N. Mana, J. Matiasek, L. Gilardoni, S. Mazza, M. Ferraro B. Black, F. Rinaldi, D. Mowatt FACILE: Classifying Texts with pattern matching and IE. Proceedings of the IJCAI'99 Conference, 890-895. August 3-6, 1999, Stockholm, Sweden compressed postscript

7. Zarri, G.P., Bertino, E., Black, B., Brasher, A., Candela, V., Catania, B., Deavin, D., Di Pace, L., Esposito, F., Leo, P., McNaught, J., Persidis, A., Rinaldi, F., & Semeraro.,G. Concerto: An environment for the intelligent indexing, querying and retrieval of digital documents. In Ras, Z.W. & Skowron, A. (eds) Foundations of Intelligent Systems. Lecture Notes in Artificial Intelligence 1609. Springer, Berlin, 226-234.

6. E. Bertino, B. Black, A. Brasher, V. Candela, B. Catania, D. Deavin, F. Esposito, J. McNaught, A. Persidis, F. Rinaldi, G. Semeraro, G.P. Zarri. Concerto, Conceptual Indexing, Querying and Retrieval of Digital Documents. ICMCS'99 Conference Special Event "THE EUROPEAN COMMUNITY DAY", June 7-11, 1999, Florence, Italy.

5. William J Black, Fabio Rinaldi and David Mowatt, FACILE: Text Categorisation and Information Extraction using pattern matching and linguistic processing. on CD-ROM published for the LINGLINK association (1998)

4. William J Black, Fabio Rinaldi and David Mowatt FACILE: DESCRIPTION OF THE NE SYSTEM USED FOR MUC-7. Proceedings of 7th Message Understanding Conference , Fairfax, VA. (1998) pdf postscript

3. W.J. Black, L. Gilardoni, R. Dressel, F. Rinaldi. Integrated text categorisation and information extraction using pattern matching and linguistic processing. Proceedings of the 5TH RIAO CONFERENCE, McGill University, Montreal, Canada, 25th-27th June 1997

2. Bernardo Magnini, Giovanni Fabris, and Fabio Rinaldi. GUM: Un'ontologia linguisticamente motivata per l'Italiano AI - Notizie , Bollettino dell'Associazione Italiana per l'Intelligenza Artificiale, num.3, September 1995, pages 7-11.

1. John Bateman, Bernardo Magnini, and Fabio Rinaldi. The Generalized {German, Italian, English} Upper Model In Nicolaas J.I. Mars, editor, Proceedings of the ECAI-94 Workshop on Implemented Ontologies, pages 35-45, Amsterdam, 1994. compressed postscript

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